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1

Hypergraph Partitioning-Based Fill-Reducing Ordering for Symmetric Matrices

Çatalyürek, Ümit V., Aykanat, Cevdet, Kayaaslan, Enver

Journal:

SIAM Journal on Scientific Computing

Year:

2011

Language:

english

File:

PDF, 1.48 MB

english, 2011

2

An XML-based System for Synthesis of Data from Disparate Databases

Tahsin Kurc, Daniel A. Janies, Andrew D. Johnson, Stephen Langella, Scott Oster, Shannon Hastings, Farhat Habib, Terry Camerlengo, David Ervin, Umit V. Catalyurek, Joel H. Saltz

Journal:

Journal of the American Medical Informatics Association

Year:

2006

Language:

english

File:

PDF, 582 KB

english, 2006

3

Dynamic generation of accident progression event trees

Aram Hakobyan, Tunc Aldemir, Richard Denning, Sean Dunagan, David Kunsman, Benjamin Rutt, Umit Catalyurek

Journal:

Nuclear Engineering and Design

Year:

2008

Language:

english

File:

PDF, 907 KB

english, 2008

4

Development of a code-agnostic computational infrastructure for the dynamic generation of accident progression event trees

Umit Catalyurek, Benjamin Rutt, Kyle Metzroth, Aram Hakobyan, Tunc Aldemir, Richard Denning, Sean Dunagan, David Kunsman

Journal:

Reliability Engineering & System Safety

Year:

2010

Language:

english

File:

PDF, 1.28 MB

english, 2010

5

A framework for scalable greedy coloring on distributed-memory parallel computers

Doruk Bozdağ, Assefaw H. Gebremedhin, Fredrik Manne, Erik G. Boman, Umit V. Catalyurek

Journal:

Journal of Parallel and Distributed Computing

Year:

2008

Language:

english

File:

PDF, 663 KB

english, 2008

6

A repartitioning hypergraph model for dynamic load balancing

Umit V. Catalyurek, Erik G. Boman, Karen D. Devine, Doruk Bozdağ, Robert T. Heaphy, Lee Ann Riesen

Journal:

Journal of Parallel and Distributed Computing

Year:

2009

Language:

english

File:

PDF, 7.81 MB

english, 2009

7

Optimizing the stretch of independent tasks on a cluster: From sequential tasks to moldable tasks

Erik Saule, Doruk Bozdağ, Ümit V. Çatalyürek

Journal:

Journal of Parallel and Distributed Computing

Year:

2012

Language:

english

File:

PDF, 847 KB

english, 2012

8

Partitioning Hypergraphs in Scientific Computing Applications through Vertex Separators on Graphs

Kayaaslan, Enver, Pinar, Ali, Çatalyürek, Ümit, Aykanat, Cevdet

Journal:

SIAM Journal on Scientific Computing

Year:

2012

Language:

english

File:

PDF, 451 KB

english, 2012

9

Permuting Sparse Rectangular Matrices into Block-Diagonal Form

Aykanat, Cevdet, Pinar, Ali, Çatalyürek, Ümit V.

Journal:

SIAM Journal on Scientific Computing

Year:

2004

Language:

english

File:

PDF, 792 KB

english, 2004

10

Graph coloring algorithms for multi-core and massively multithreaded architectures

Ümit V. Çatalyürek, John Feo, Assefaw H. Gebremedhin, Mahantesh Halappanavar, Alex Pothen

Journal:

Parallel Computing

Year:

2012

Language:

english

File:

PDF, 4.00 MB

english, 2012

11

[IEEE 2009 IEEE International Conference on Cluster Computing and Workshops - New Orleans, LA, USA (2009.08.31-2009.09.4)] 2009 IEEE International Conference on Cluster Computing and Workshops - Investigating the use of GPU-accelerated nodes for SAR image formation

Hartley, Timothy D. R., Fasih, Ahmed R., Berdanier, Charles A., Ozguner, Fusun, Catalyurek, Umit V.

Year:

2009

Language:

english

File:

PDF, 874 KB

english, 2009

12

[IEEE Distributed Processing Symposium (IPDPS) - Miami, FL, USA (2008.04.14-2008.04.18)] 2008 IEEE International Symposium on Parallel and Distributed Processing - A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP

Gaurav Khanna,, Umit Catalyurek,, Tahsin Kurc,, Rajkumar Kettimuthu,, Sadayappan, P., Saltz, Joel

Year:

2008

Language:

english

File:

PDF, 491 KB

english, 2008

13

Hypergraph partitioning for multiple communication cost metrics: Model and methods

Deveci, Mehmet, Kaya, Kamer, Uçar, Bora, Çatalyürek, Ümit V.

Journal:

Journal of Parallel and Distributed Computing

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

14

[IEEE Distributed Processing Symposium (IPDPS) - Miami, FL, USA (2008.04.14-2008.04.18)] 2008 IEEE International Symposium on Parallel and Distributed Processing - Translational research design templates, Grid computing, and HPC

Saltz, Joel, Oster, Scott, Hastings, Shannon, Langella, Stephen, Ferreira, Renato, Permar, Justin, Sharma, Ashish, Ervin, David, Pan, Tony, Catalyurek, Umit, Kurc, Tahsin

Year:

2008

Language:

english

File:

PDF, 795 KB

english, 2008

15

Advances in parallel partitioning, load balancing and matrix ordering for scientific computing

Boman, Erik G, Catalyurek, Umit V, Chevalier, Céedric, Devine, Karen D, Safro, Ilya, Wolf, Michael M

Journal:

Journal of Physics Conference Series

Year:

2009

Language:

english

File:

PDF, 690 KB

english, 2009

16

[ACM Press the 24th International Conference - Florence, Italy (2015.05.18-2015.05.22)] Proceedings of the 24th International Conference on World Wide Web - WWW '15 - Finding the Hierarchy of Dense Subgraphs using Nucleus Decompositions

Sariyuce, Ahmet Erdem, Seshadhri, C., Pinar, Ali, Catalyurek, Umit V.

Year:

2015

Language:

english

File:

PDF, 1.68 MB

english, 2015

17

[IEEE 2018 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) - Barcelona, Spain (2018.8.28-2018.8.31)] 2018 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) - Local Detection of Critical Nodes in Active Graphs

Ozkaya, M. Yusuf, Sanyuce, Ahmet Erdem, Pinar, Ali, Catalyurek, Umit V.

Year:

2018

Language:

english

File:

PDF, 1.23 MB

english, 2018

18

[IEEE 2018 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) - Barcelona, Spain (2018.8.28-2018.8.31)] 2018 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) - SiNA: A Scalable Iterative Network Aligner

Yasar, Abdurrahman, Ucar, Bora, Catalyurek, Umit V.

Year:

2018

Language:

english

File:

PDF, 21.74 MB

english, 2018

19

Multilevel Algorithms for Acyclic Partitioning of Directed Acyclic Graphs

Herrmann, Julien, Özkaya, M. Yusuf, Uçar, Bora, Kaya, Kamer, Çatalyürek, Ümit V.

Journal:

SIAM Journal on Scientific Computing

Year:

2019

Language:

english

File:

PDF, 758 KB

english, 2019

20

Multilevel Algorithms for Acyclic Partitioning of Directed Acyclic Graphs

Herrmann, Julien, Özkaya, M. Yusuf, Uçar, Bora, Kaya, Kamer, Çatalyürek, Ümit V.

Journal:

SIAM Journal on Scientific Computing

Year:

2019

File:

PDF, 758 KB

2019

21

[IEEE 2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS) - Rio de Janeiro, Brazil (2019.5.20-2019.5.24)] 2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS) - A Scalable Clustering-Based Task Scheduler for Homogeneous Processors Using DAG Partitioning

Ozkaya, M. Yusuf, Benoit, Anne, Ucar, Bora, Herrmann, Julien, Catalyurek, Umit V.

Year:

2019

Language:

english

File:

PDF, 1.02 MB

english, 2019

22

A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies

Tahsin Kurc, Umit Catalyurek, Xi Zhang, Joel Saltz, Ryan Martino, Mary Wheeler, Małgorzata Peszyńska, Alan Sussman, Christian Hansen, Mrinal Sen, Roustam Seifoullaev, Paul Stoffa, Carlos Torres-Verdin

Journal:

Concurrency and Computation: Practice and Experience

Year:

2005

Language:

english

File:

PDF, 1.99 MB

english, 2005

23

Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies

Manish Parashar, Hector Klie, Umit Catalyurek, Tahsin Kurc, Wolfgang Bangerth, Vincent Matossian, Joel Saltz, Mary F. Wheeler

Journal:

Future Generation Computer Systems

Year:

2005

Language:

english

File:

PDF, 312 KB

english, 2005

24

A Matrix Partitioning Interface to PaToH in MATLAB

Bora Uçar, Ümit V. Çatalyürek, Cevdet Aykanat

Journal:

Parallel Computing

Year:

2010

Language:

english

File:

PDF, 1.21 MB

english, 2010

25

Distributed processing of very large datasets with DataCutter

Michael D Beynon, Tahsin Kurc, Umit Catalyurek, Chialin Chang, Alan Sussman, Joel Saltz

Journal:

Parallel Computing

Year:

2001

Language:

english

File:

PDF, 436 KB

english, 2001

26

Processing large-scale multi-dimensional data in parallel and distributed environments

Michael Beynon, Chialin Chang, Umit Catalyurek, Tahsin Kurc, Alan Sussman, Henrique Andrade, Renato Ferreira, Joel Saltz

Journal:

Parallel Computing

Year:

2002

Language:

english

File:

PDF, 500 KB

english, 2002

27

A Knowledge-Anchored Integrative Image Search and Retrieval System

Selnur Erdal, Umit V. Catalyurek, Philip R. O. Payne, Joel Saltz, Jyoti Kamal, Metin N. Gurcan

Journal:

Journal of Digital Imaging

Year:

2009

Language:

english

File:

PDF, 492 KB

english, 2009

28

Histopathological Image Analysis Using Model-Based Intermediate Representations and Color Texture: Follicular Lymphoma Grading

Olcay Sertel, Jun Kong, Umit V. Catalyurek, Gerard Lozanski, Joel H. Saltz, Metin N. Gurcan

Journal:

Journal of Signal Processing Systems

Year:

2009

Language:

english

File:

PDF, 1.02 MB

english, 2009

29

The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases

Daniel A. Janies, Travis Treseder, Boyan Alexandrov, Farhat Habib, Jennifer J. Chen, Renato Ferreira, Ümit Çatalyürek, Andrés Varón, Ward C. Wheeler

Journal:

Year:

2011

Language:

english

File:

PDF, 282 KB

english, 2011

30

[ACM Press the 22nd annual international conference - Island of Kos, Greece (2008.06.07-2008.06.12)] Proceedings of the 22nd annual international conference on Supercomputing - ICS '08 - Biomedical image analysis on a cooperative cluster of GPUs and multicores

Hartley, Timothy D.R., Catalyurek, Umit, Ruiz, Antonio, Igual, Francisco, Mayo, Rafael, Ujaldon, Manuel

Year:

2008

Language:

english

File:

PDF, 486 KB

english, 2008

31

Optimizing dataflow applications on heterogeneous environments

George Teodoro, Timothy D. R. Hartley, Umit V. Catalyurek, Renato Ferreira

Journal:

Cluster Computing

Year:

2012

Language:

english

File:

PDF, 2.63 MB

english, 2012

32

Optimizing latency and throughput of application workflows on clusters

Naga Vydyanathan, Umit Catalyurek, Tahsin Kurc, Ponnuswamy Sadayappan, Joel Saltz

Journal:

Parallel Computing

Year:

2011

Language:

english

File:

PDF, 1.44 MB

english, 2011

33

Load-balancing spatially located computations using rectangular partitions

Erik Saule, Erdeniz Ö. Baş, Ümit V. Çatalyürek

Journal:

Journal of Parallel and Distributed Computing

Year:

2012

Language:

english

File:

PDF, 1.23 MB

english, 2012

34

[Communications in Computer and Information Science] Contemporary Computing Volume 168 || SDDP: Scalable Distributed Diagnosis Protocol for Wireless Sensor Networks

Aluru, Srinivas, Bandyopadhyay, Sanghamitra, Catalyurek, Umit V., Dubhashi, Devdatt P., Jones, Phillip H., Parashar, Manish, Schmidt, Bertil

Year:

2011

Language:

english

File:

PDF, 217 KB

english, 2011

35

[Communications in Computer and Information Science] Contemporary Computing Volume 168 || An Analysis of Security Related Issues in Cloud Computing

Aluru, Srinivas, Bandyopadhyay, Sanghamitra, Catalyurek, Umit V., Dubhashi, Devdatt P., Jones, Phillip H., Parashar, Manish, Schmidt, Bertil

Year:

2011

Language:

english

File:

PDF, 439 KB

english, 2011

36

Merging network patterns: a general framework to summarize biomedical network data

Xiang, Yang, Fuhry, David, Kaya, Kamer, Jin, Ruoming, Çatalyürek, Ümit V., Huang, Kun

Journal:

Network Modeling and Analysis in Health Informatics and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 910 KB

english, 2012

37

Improving performance of adaptive component-based dataflow middleware

Timothy D.R. Hartley, Erik Saule, Ümit V. Çatalyürek

Journal:

Parallel Computing

Year:

2012

Language:

english

File:

PDF, 1.44 MB

english, 2012

38

A Grid-Based Image Archival and Analysis System

Shannon Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurc, Tony Pan, Umit V. Catalyurek, Joel H. Saltz

Journal:

Journal of the American Medical Informatics Association

Year:

2005

Language:

english

File:

PDF, 513 KB

english, 2005

39

[IEEE Distributed Processing, Workshops and Phd Forum (IPDPSW) - Anchorage, AK, USA (2011.05.16-2011.05.20)] 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum - Distributed-Memory Parallel Algorithms for Matching and Coloring

Çatalyürek, Ümit V., Dobrian, Florin, Gebremedhin, Assefaw, Halappanavar, Mahantesh, Pothen, Alex

Year:

2011

Language:

english

File:

PDF, 1.32 MB

english, 2011

40

[Communications in Computer and Information Science] Contemporary Computing Volume 168 ||

Aluru, Srinivas, Bandyopadhyay, Sanghamitra, Catalyurek, Umit V., Dubhashi, Devdatt P., Jones, Phillip H., Parashar, Manish, Schmidt, Bertil

Year:

2011

Language:

english

File:

PDF, 12.17 MB

english, 2011

41

Benchmarking short sequence mapping tools

Ayat Hatem, Doruk Bozdağ, Amanda E Toland, Ümit V Çatalyürek

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 411 KB

english, 2013

42

[IEEE 2011 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Atlanta, GA, USA (2011.11.12-2011.11.15)] 2011 IEEE International Conference on Bioinformatics and Biomedicine - Benchmarking Short Sequence Mapping Tools

Hatem, Ayat, Bozdag, Doruk, Catalyurek, Umit V.

Year:

2011

Language:

english

File:

PDF, 148 KB

english, 2011

43

[Communications in Computer and Information Science] Contemporary Computing Volume 168 || Morphology Based Feature Extraction and Recognition for Enhanced Wheat Quality Evaluation

Aluru, Srinivas, Bandyopadhyay, Sanghamitra, Catalyurek, Umit V., Dubhashi, Devdatt P., Jones, Phillip H., Parashar, Manish, Schmidt, Bertil

Year:

2011

Language:

english

File:

PDF, 555 KB

english, 2011

44

A survey of pipelined workflow scheduling

Benoit, Anne, Çatalyürek, Ümit V., Robert, Yves, Saule, Erik

Journal:

ACM Computing Surveys

Year:

2013

Language:

english

File:

PDF, 1.95 MB

english, 2013

45

[Communications in Computer and Information Science] Contemporary Computing Volume 168 || Cryptanalysis of Enhancements of a Password Authentication Scheme over Insecure Networks

Aluru, Srinivas, Bandyopadhyay, Sanghamitra, Catalyurek, Umit V., Dubhashi, Devdatt P., Jones, Phillip H., Parashar, Manish, Schmidt, Bertil

Year:

2011

Language:

english

File:

PDF, 176 KB

english, 2011

46

[IEEE 2011 IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology (HISB) - San Jose, CA, USA (2011.07.26-2011.07.29)] 2011 IEEE First International Conference on Healthcare Informatics, Imaging and Systems Biology - Acceleration of Two Point Correlation Function Calculation for Pathology Image Segmentation

Cooper, Lee A.D., Saltz, Joel H., Catalyurek, Umit, Huang, Kun

Year:

2011

Language:

english

File:

PDF, 1.04 MB

english, 2011

47

[IEEE 2014 International Conference on Computing, Networking and Communications (ICNC) - Honolulu, HI, USA (2014.02.3-2014.02.6)] 2014 International Conference on Computing, Networking and Communications (ICNC) - Wide-area overlay networking to manage science DMZ accelerated flows

Calyam, Prasad, Berryman, Alex, Saule, Erik, Subramoni, Hari, Schopis, Paul, Springer, Gordon, Catalyurek, Umit, Panda, D. K.

Year:

2014

Language:

english

File:

PDF, 867 KB

english, 2014

48

[IEEE 2012 IEEE International Symposium on Parallel & Distributed Processing (IPDPS) - Shanghai, China (2012.05.21-2012.05.25)] 2012 IEEE 26th International Parallel and Distributed Processing Symposium - Multithreaded Clustering for Multi-level Hypergraph Partitioning

Catalyurek, Umit V., Deveci, Mehmet, Kaya, Kamer, Ucar, Bora

Year:

2012

Language:

english

File:

PDF, 1.18 MB

english, 2012

49

[IEEE 2008 37th International Conference on Parallel Processing (ICPP) - Portland, Oregon, USA (2008.09.9-2008.09.12)] 2008 37th International Conference on Parallel Processing - A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows

Vydyanathan, Nagavijayalakshmi, Catalyurek, Umit, Kurc, Tahsin, Sadayappan, Ponnuswamy, Saltz, Joel

Year:

2008

Language:

english

File:

PDF, 1.03 MB

english, 2008

50

Regularizing graph centrality computations

Sarıyüce, Ahmet Erdem, Saule, Erik, Kaya, Kamer, Çatalyürek, Ümit V.

Journal:

Journal of Parallel and Distributed Computing

Year:

2015

Language:

english

File:

PDF, 1.32 MB

english, 2015

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